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Natural Grocers by Vitamin Cottage, Inc.

For the period ended Sep 30, 2025. Filed Dec 11, 2025.

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A company's yearly report to the SEC, with audited financial statements. It is the fullest account a company gives of its business, its finances and the risks it sees.

FY2025 · Filed Dec 11, 2025

NGVC$29.37+0.9%Stored close · as of Nov 10, 2026

Extracted filing text, with the paragraph anchors used by the comparison.

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Contents

Item 15. Exhibits and Financial Statement Schedules

2.Financial Statement Schedules: Schedules not listed above have been omitted because the information required to be set forth therein is not applicable or is shown in the financial statements or notes herein.
3.Exhibits:

EXHIBIT INDEX

Exhibit NumberDescriptionFormFile No.Exhibit NumberFiling Date
3.1Amended and Restated Certificate of IncorporationForm S-1333-1821863.1July 5, 2012
3.2Certificate of Amendment to Amended and Restated Certificate of IncorporationForm 8-K001-356083.1March 11, 2025
3.3Amended and Restated BylawsForm S-1333-1821863.2July 5, 2012
4.1Reference is made to Exhibits 3.1 and 3.2
4.2Specimen Common Stock CertificateForm S-1333-1821864.2July 20, 2012
4.3Form of Notice of Grant of Stock Unit AwardForm S-8333-1828864.2July 27, 2012
4.4Form of Registration Rights AgreementForm S-1333-1821864.3July 5, 2012
10.1Second Amended and Restated Employment Agreement by and between Vitamin Cottage Natural Food Markets, Inc., Natural Grocers by Vitamin Cottage, Inc. and Sandra M. Buffa, dated June 26, 2012*Form 10-Q001-3560810.1January 29, 2015
10.2Natural Grocers by Vitamin Cottage, Inc. 2012 Omnibus Incentive Plan, as amended*Form 8-K001-3560810.1March 12, 2024
10.3Summary of Compensation Arrangements for Non-Employee Directors*Form 10-K001-3560810.3December 7, 2023
10.4Form of Indemnification Agreement*Form S-1333-18218610.18June 29, 2012
10.5Shopping Center Lease by and between Chalet Properties, LLC and Vitamin Cottage Natural Food Markets, Inc., dated January 1, 2010Form S-1333-18218610.19June 29, 2012
10.6Ground lease by and between 3801 East Second Avenue, LLC and Vitamin Cottage Natural Food Markets, Inc., dated March 1, 2001Form S-1333-18218610.20June 29, 2012
10.7Commercial Lease by and between Chalet Properties, LLC and Vitamin Cottage Natural Food Markets, Inc., dated June 1, 2006Form S-1333-18218610.21June 29, 2012
10.8Lease by and between Chalet Properties, LLC and Boulder Vitamin Cottage Group, LLC, dated July 1, 2011Form S-1333-18218610.24June 29, 2012
10.9Lease by and between Isely Family Land Trust, LLC and Vitamin Cottage Natural Food Markets, Inc., dated February 29, 2012Form S-1333-18218610.25June 29, 2012
10.10Lease by and between Chalet Properties, Austin, LLC and Vitamin Cottage Natural Food Markets, Inc., dated February 29, 2012Form S-1333-18218610.26June 29, 2012
10.11Building Lease by and between Chalet Properties, LLC and Vitamin Cottage Natural Food Markets, Inc., dated December 8, 2010Form S-1333-18218610.27June 29, 2012
10.12Form of Stockholders Agreement, by, between and among Natural Grocers by Vitamin Cottage, Inc. and the stockholders to be named thereinForm S-1333-18218610.32July 12, 2012
10.13Credit Agreement dated as of January 28, 2016 by and among Vitamin Cottage Natural Food Markets, Inc., the Guarantors party thereto, the Lenders Party thereto and Bank of America, N.A., as Administrative Agent and L/C IssuerForm 10-Q001-3560810.39January 28, 2016
10.14Security and Pledge Agreement dated as of January 28, 2016 by and among Vitamin Cottage Natural Food Markets, Inc., Natural Grocers by Vitamin Cottage, Inc., Vitamin Cottage Two Ltd. Liability Company, the other Obligors thereunder and Bank of America, N.A.Form 10-Q001-3560810.40January 28, 2016
10.15First Amendment to Credit Agreement dated as of May 10, 2016, by and among Vitamin Cottage Natural Food Markets, Inc., the Guarantors party thereto, the Lenders Party thereto and Bank of America, N.A., as Administrative Agent and L/C IssuerForm 10-Q001-3560810.42July 28, 2016
10.16Incentive Compensation Program*Form 10-Q001-3560810.43February 2, 2017
10.17Second Amendment to Credit Agreement dated as of September 6, 2017, by and among Vitamin Cottage Natural Food Markets, Inc., the Guarantors party thereto, the Lenders Party thereto and Bank of America, N.A., as Administrative Agent, L/C Issuer and Swing Line LenderForm 10-K001-3560810.44December 7, 2017
10.18Autoborrow Agreement dated as of September 6, 2017, by and between Vitamin Cottage Natural Food Markets, Inc. and Bank of America, N.A.Form 10-K001-3560810.45December 7, 2017
10.19Employment offer letter to Todd Dissinger dated December 5, 2017*Form 10-Q001-3560810.46February 1, 2018
10.20Notice of Grant of Stock Unit Award to Todd Dissinger dated January 2, 2018*Form 10-Q001-3560810.47February 1, 2018
10.21First Amendment to Lease dated as of July 31, 2019 by and between Chalet Properties, Austin, LLC and Vitamin Cottage Natural Food Markets, Inc.Form 10-Q001-3560810.49August 1, 2019
10.22Third Amendment to Credit Agreement dated as of November 13, 2019, by and among Vitamin Cottage Natural Food Markets, Inc., the Guarantors party thereto, the Lenders Party thereto and Bank of America, N.A., as Administrative Agent, L/C Issuer and Swing Line LenderForm 10-K001-3560810.51December 5, 2019
10.23Amended and Restated Lease, dated August 3, 2020, between Chalet Properties of Pueblo, LLC and Vitamin Cottage Natural Food Markets, Inc.Form 10-Q001-3560810.1August 6, 2020
10.24Fourth Amendment to Credit Agreement dated as of November 18, 2020, by and among Vitamin Cottage Natural Food Markets, Inc., the Guarantors party thereto, the Lenders Party thereto and Bank of America, N.A., as Administrative Agent, L/C Issuer and Swing Line LenderForm 8-K001-3560810.1November 24, 2020
10.25Fifth Amendment to Credit Agreement dated as of September 16, 2021, by and among Vitamin Cottage Natural Food Markets, Inc., the Guarantors party thereto, the Lenders Party thereto and Bank of America, N.A., as Administrative Agent, L/C Issuer and Swing Line LenderForm 8-K001-3560810.1September 16, 2021
10.26Lease, dated May 4, 2022, between Chalet Properties, LLC and Vitamin Cottage Natural Food Markets, Inc.Form 10‑Q001-3560810.1May 5, 2022
10.27Sixth Amendment to Credit Agreement dated as of December 15, 2022, by and among Vitamin Cottage Natural Food Markets, Inc., the Guarantors party thereto, the lenders party, and Bank of America, N.A as Administrative Agent, L/C Issuer and Swing Line LenderForm 8-K001-3560810.1December 21, 2022
10.28First Amendment to Lease, dated May 3, 2023, by and between Chalet Properties, LLC and Vitamin Cottage Natural Food Markets, Inc.Form 10-Q001-3560810.1May 4, 2023
10.29Amendment to Commercial Lease, dated May 3, 2023, by and between Chalet Properties, LLC and Vitamin Cottage Natural Food Markets, Inc.Form 10-Q001-3560810.2May 4, 2023
10.30#Amended and Restated Customer Distribution Agreement, dated August 23, 2023, between Vitamin Cottage Natural Food Markets, Inc. and United Natural Foods, Inc.Form 10-K001-3560810.37December 7, 2023
10.31Seventh Amendment to Credit Agreement dated as of November 16, 2023, by and among Vitamin Cottage Natural Food Markets, Inc., the Guarantors party thereto, the lenders party thereto, and Bank of America, N.A. as Administrative Agent, L/C Issuer and Swing Line Lender.Form 8-K001-3560810.1November 22, 2023
10.32Employment Offer Letter to Richard Hallé dated October 31, 2024*Form 8-K001-3560810.1November 6, 2024
10.33Notice of Grant of Stock Unit Award to Richard Hallé*Form 8-K001-3560810.2November 6, 2024
10.34Shopping Center Lease, by and between Chalet Properties of Pueblo, L.L.C. and Vitamin Cottage Natural Food Markets, Inc., dated May 7, 2025Form 10-Q001-3560810.1May 8, 2025
10.35First Amendment to Lease, by and between Isely Family Land Trust, LLC and Vitamin Cottage Natural Food Markets, Inc., dated May 7, 2025Form 10-Q001-3560810.2May 8, 2025
23.1Consent of KPMG LLP————
31.1Certification of Kemper Isely, a Principal Executive Officer Required Under Section 302(a) of the Sarbanes-Oxley Act of 2002————
31.2Certification of Zephyr Isely, a Principal Executive Officer Required Under Section 302(a) of the Sarbanes-Oxley Act of 2002———
31.3Certification of Todd Dissinger, Principal Financial Officer Required Under Section 302(a) of the Sarbanes-Oxley Act of 2002————
32.1Certification of Principal Executive Officers and Principal Financial Officer Required Under 18 U.S.C. §1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002†————
101The following materials from Natural Grocers by Vitamin Cottage, Inc.’s Annual Report on Form 10-K for the year ended September 30, 2025, formatted in Inline XBRL (eXtensible Business Reporting Language): (i) Consolidated Balance Sheets, (ii) Consolidated Statements of Income, (iii) Consolidated Statements of Cash Flows, (iv) Consolidated Statements of Changes in Stockholders’ Equity, and (v) Notes to Consolidated Financial Statements.
104Cover Page Interactive Data File (embedded within the Inline XBRL and contained in Exhibit 101)

* Indicates a management contract or compensatory plan or arrangement.

# Confidential portions have been omitted.

† The certifications attached as Exhibit 32.1 that accompany this Annual Report on Form 10-K, are not deemed filed with the Securities and Exchange Commission and are not to be incorporated by reference into any filing of Natural Grocers by Vitamin Cottage, Inc. under the Securities Act of 1933, as amended, or the Securities Exchange Act of 1934, as amended, whether made before or after the date of this Form 10-K, irrespective of any general incorporation language contained in such filing.

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