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Ultragenyx Pharmaceutical Inc

For the period ended Dec 31, 2024. Filed Feb 19, 2025.

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A company's yearly report to the SEC, with audited financial statements. It is the fullest account a company gives of its business, its finances and the risks it sees.

FY2024 · Filed Feb 19, 2025

RARE$16.14-1.6%Stored close · as of Nov 10, 2026

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Contents

Item 15. Exhibits and Financial Statement Schedules

(a) The following documents are filed as part of this Annual Report.

(1) Consolidated Financial Statements

Consolidated Financial Statements—See Index to Consolidated Financial Statements at page F-1 of this Annual Report.

(2) Consolidated Financial Statement Schedules

Consolidated Financial Statement schedules have been omitted in this Annual Report because they are not applicable, not required under the instructions, or the information requested is set forth in the Consolidated Financial Statements or related notes thereto.

(b) Exhibits

Exhibit · Incorporated by Reference · Filed
Number · Exhibit Description · Form · Date · Number · Herewith
3.1Amended and Restated Certificate of Incorporation8-K2/5/20143.1
3.2Second Amended and Restated Bylaws8-K12/21/20233.1
4.1Form of Common Stock CertificateS-111/8/20134.2
4.2Form of IndentureS-3 ASR2/21/20244.2
4.3Form of Pre-Funded Warrant8-K10/23/20234.1
4.4Form of Pre-Funded Warrant8-K6/17/20244.1
4.5Description of Common Stock10-K2/14/20204.3
10.1*Collaboration and License Agreement, effective as of August 29, 2013, between Ultragenyx Pharmaceutical Inc. and Kyowa Hakko Kirin Co., Ltd.S-1/A12/23/201310.1
10.2Amendment No. 1 to Collaboration and License Agreement, effective as of August 24, 2015, between Ultragenyx Pharmaceutical Inc. and Kyowa Hakko Kirin Co., Ltd.10-Q11/10/201510.2
10.3Amendment No. 2 to Collaboration and License Agreement, effective as of November 28, 2016, between Ultragenyx Pharmaceutical Inc. and Kyowa Hakko Kirin Co., Ltd.10-K2/21/201810.3
10.4*Amendment No. 3 to Collaboration and License Agreement, effective September 29, 2017, between Ultragenyx Pharmaceutical Inc. and Kyowa Hakko Kirin Co., Ltd.10-K2/21/201810.4
10.5*Amendment No. 4 to Collaboration and License Agreement, effective as of January 29, 2018, between Ultragenyx Pharmaceutical Inc. and Kyowa Hakko Kirin Co., Ltd.10-K2/21/201810.5
10.6*Amendment No. 5 to Collaboration and License Agreement, effective as of April 30, 2018, between Ultragenyx Pharmaceutical Inc. and Kyowa Hakko Kirin Co., Ltd.10-Q8/3/201810.1
10.7*Amendment No. 6 to Collaboration and License Agreement, effective as of February 1, 2019, between Ultragenyx Pharmaceutical Inc. and Kyowa Hakko Kirin Co., Ltd.10-Q5/7/201910.2
10.8*Amendment No. 7 to Collaboration and License Agreement, effective as of December 5, 2018, between Ultragenyx Pharmaceutical Inc. and Kyowa Hakko Kirin Co., Ltd.10-Q5/7/201910.3
10.9*Amendment No. 8 to Collaboration and License Agreement, effective as of July 4, 2019, between Ultragenyx Pharmaceutical Inc. and Kyowa Kirin Co., Ltd. (formerly, Kyowa Hakko Kirin Co., Ltd.)10-Q8/2/201910.1
10.10*Amendment No. 9 to Collaboration and License Agreement, effective December 23, 2019, between Ultragenyx Pharmaceutical Inc. and Kyowa Kirin Co., Ltd.10-K2/14/202010.10
10.11*Amendment No. 10 to Collaboration and License Agreement, effective as of April 1, 2020, between Ultragenyx Pharmaceutical Inc. and Kyowa Kirin Co., Ltd.10-Q5/7/202010.2
10.12*Amendment No. 11 to Collaboration and License Agreement, effective as of December 17, 2021 between Ultragenyx Pharmaceutical Inc. and Kyowa Kirin Co., Ltd.10-K2/16/202210.13
10.13*Amendment No. 12 to Collaboration and License Agreement, effective as of September 29, 2022, between Ultragenyx Pharmaceutical Inc. and Kyowa Kirin Co., Ltd.10-Q11/3/202210.1
10.14*Amendment No. 13 to Collaboration and License Agreement, effective as of May 16, 2023, between Ultragenyx Pharmaceutical Inc. and Kyowa Kirin Co., Ltd.10-Q8/3/202310.1
10.15*Supply Agreement, effective as of November 18, 2020, between Ultragenyx Pharmaceutical Inc. and Kyowa Kirin Inc.X
10.16*Amendment No. 1, effective as of September 13, 2024, to the Supply Agreement between Ultragenyx Pharmaceutical Inc. and Kyowa Kirin, Inc.X
10.17*Unit Purchase Agreement, dated as of July 15, 2022, by and among Ultragenyx Pharmaceutical Inc., GeneTx Biotherapeutics LLC, the Unitholders and Deborah A. Guagliardo10-Q7/29/202210.2
10.18*Royalty Purchase Agreement, dated as of December 17, 2019, between Ultragenyx Pharmaceutical Inc. and RPI Finance Trust10-K2/14/202010.25
10.19*Royalty Purchase Agreement, dated as of July 14, 2022, by and among Rare Delaware Inc., Ultragenyx Pharmaceutical Inc. and OCM LS23 Holdings LP10-Q7/29/202210.1
10.20#2014 Incentive Plan (as amended)10-K2/17/201710.20
10.21#Form of Incentive Stock Option Agreement (2014 Plan)S-1/A1/17/201410.14
10.22#Form of Non Statutory Stock Option Agreement (Employees) (2014 Plan)S-1/A1/17/201410.15
10.23#Form of Restricted Stock Unit Agreement (Employees) (2014 Plan)10-Q5/10/201610.1
10.24#Form of Non-Statutory Stock Option Agreement (Annual Grant for Directors) (2014 Plan)10-Q8/3/202110.2
10.25#Form of Restricted Stock Unit Agreement (Annual Grant for Directors) (2014 Plan)10-Q8/3/202110.3
10.26#Form of Non-Statutory Stock Option Agreement (Grant for New Directors) (2014 Plan)10-Q8/3/202110.4
10.27#Form of Restricted Stock Unit Agreement (Grant for New Directors) (2014 Plan)10-Q8/3/202110.5
10.28#Amended and Restated 2023 Incentive PlanS-87/12/20244.4
10.29#Form of Incentive Stock Option Agreement (2023 Plan)10-K2/21/202410.30
10.30#Form of Non Statutory Stock Option Agreement (Employees)(2023 Plan)10-K2/21/202410.31
10.31#Form of Restricted Stock Unit Agreement (Employees) (2023 Plan)10-K2/21/202410.32
10.32#Form of Non-Statutory Stock Option Agreement (Annual Grant for Directors) (2023 Plan)10-K2/21/202410.33
10.33#Form of Restricted Stock Unit Agreement (Annual Grant for Directors) (2023 Plan)10-K2/21/202410.34
10.34#Form of Non-Statutory Stock Option Agreement (Grant for New Directors) (2023 Plan)10-K2/21/202410.35
10.35#Form of Restricted Stock Unit Agreement (Grant for New Directors) (2023 Plan)10-K2/21/202410.36
10.36#Form of Performance Stock Unit Agreement (2022)10-Q5/6/202210.1
10.37#Form of Performance Stock Unit Agreement (2023)10-Q5/4/202310.1
10.38#Form of Performance Stock Unit Agreement (2024)X
10.39#Amended and Restated 2014 Employee Stock Purchase PlanS-86/8/20234.5
10.40#Corporate Bonus PlanS-1/A1/17/201410.27
10.41#Employment Inducement Plan10-K2/12/202110.43
10.42#First Amendment to Employment Inducement PlanS-86/8/20234.7
10.43#Second Amendment to Employment Inducement PlanS-87/12/20244.7
10.44#Form of Non Statutory Stock Option Agreement (Inducement Plan)10-K2/12/202110.44
10.45#Form of Non Statutory Stock Option Agreement (Inducement Plan) (ex-US)10-K2/12/202110.45
10.46#Form of Restricted Stock Unit Agreement (Inducement Plan)10-K2/12/202110.46
10.47#Form of Restricted Stock Unit Agreement (Inducement Plan)(ex-US)10-K2/12/202110.47
10.48#Ultragenyx Pharmaceutical Inc. Deferred Compensation Plan10-Q8/3/202110.1
10.49#Amendment No. 1 to the Ultragenyx Pharmaceutical Inc. Deferred Compensation Plan10-Q11/3/202110.1
10.50#Executive Employment Agreement, dated as of June 15, 2011, between Ultragenyx Pharmaceutical Inc. and Emil D. Kakkis, M.D., Ph.D.S-111/8/201310.18
10.51#Amendment No. 1 to Executive Employment Agreement, dated August 8, 2014, between Ultragenyx Pharmaceutical Inc. and Emil D. Kakkis, M.D., Ph.D.10-Q8/11/201410.2
10.52#Amendment No. 2, dated September 13, 2022, to Executive Employment Agreement between Ultragenyx Pharmaceutical Inc. and Emil D. Kakkis, M.D., Ph.D.10-Q11/3/202210.2
10.53#Offer Letter, dated as of October 31, 2011, between Ultragenyx Pharmaceutical Inc. and Thomas KassbergS-111/8/201310.19
10.54#Amendment No. 1 to Offer Letter, dated as of August 8, 2014, between Ultragenyx Pharmaceutical Inc. and Thomas Kassberg10-Q8/11/201410.3
10.55#Amendment No. 2, dated September 13, 2022, to Offer Letter between Ultragenyx Pharmaceutical Inc. and Thomas Kassberg10-Q11/3/202210.5
10.56#Offer Letter, dated as of April 26, 2016, between Ultragenyx Pharmaceutical Inc. and Karah Parschauer10-Q8/9/201610.3
10.57#Amendment, dated September 13, 2022, to Offer Letter between Ultragenyx Pharmaceutical Inc. and Karah Parschauer10-Q11/3/202210.6
10.58#Offer Letter, dated as of February 20, 2015, between Ultragenyx Pharmaceutical Inc. and Dennis Huang10-K2/17/201710.36
10.59#Amendment, dated September 13, 2022, to Offer Letter between Ultragenyx Pharmaceutical Inc. and Dennis Huang10-Q11/3/202210.7
10.60#Offer Letter, dated as of June 11, 2015, between Ultragenyx Pharmaceutical Inc. and John R. Pinion II10-K2/17/201710.37
10.61#Amendment, dated September 13, 2022, to Offer Letter between Ultragenyx Pharmaceutical Inc. and John R. Pinion II10-Q11/3/202210.9
10.62#Amended and Restated Offer Letter, dated March 31, 2023, between Ultragenyx Pharmaceutical Inc. and Eric Crombez, M.D.10-Q5/4/202310.2
10.63#Offer Letter, dated June 2, 2023, between Ultragenyx Pharmaceutical Inc. and Howard Horn8-K7/12/202310.1
10.64#Amendment, dated September 6, 2023, to the Offer Letter between Ultragenyx Pharmaceutical Inc. and Howard Horn8-K9/8/202310.1
10.65#Offer Letter, dated May 16, 2017, between Ultragenyx Pharmaceutical Inc. and Erik Harris10-Q8/2/201910.4
10.66#Addendum #1, dated August 8, 2017, to Offer Letter dated May 16, 2017 between Ultragenyx Pharmaceutical Inc. and Erik Harris10-Q8/2/201910.5
10.67#Addendum #2, dated June 19, 2019, to Offer Letter dated May 16, 2017 between Ultragenyx Pharmaceutical Inc. and Erik Harris10-Q8/2/201910.6
10.68#Amendment No. 3, dated September 13, 2022, to Offer Letter between Ultragenyx Pharmaceutical Inc. and Erik Harris10-Q11/3/202210.8
10.69#Form of Indemnification Agreement10-K3/24/201410.23
10.70Standard Lease, dated as of July 5, 2011, between Ultragenyx Pharmaceutical Inc. and Condiotti Enterprises, Inc.S-111/8/201310.22
10.71Addendum One to Standard Lease, dated as of July 5, 2011, between Ultragenyx Pharmaceutical Inc. and Condiotti Enterprises, Inc.10-K2/26/201610.34
10.72Addendum Two to Standard Lease, dated as of March 7, 2012, between Ultragenyx Pharmaceutical Inc. and Condiotti Enterprises, Inc.10-K2/26/201610.35
10.73Addendum #3 to Standard Lease, effective as of February 12, 2014, between Ultragenyx Pharmaceutical Inc. and Condiotti Enterprises, Inc.8-K2/25/201410.1
10.74Addendum #4 to Standard Lease, effective as of March 9, 2015, between Ultragenyx Pharmaceutical Inc. and Condiotti Enterprises, Inc.8-K3/13/201510.1
10.75Addendum #5 to Standard Lease, effective as of April 7, 2015, between Ultragenyx Pharmaceutical Inc. and Condiotti Enterprises, Inc.10-K2/26/201610.38
10.76Addendum #6 to Standard Lease, effective as of April 29, 2019, between Ultragenyx Pharmaceutical Inc. and Condiotti Enterprises, Inc.10-Q8/2/201910.3
10.77Addendum #7 to Standard Lease, effective as of November 22, 2024, between Ultragenyx Pharmaceutical Inc. and Condiotti Enterprises, Inc.X
10.78Lease Agreement, dated as of December 8, 2015, between Marina Boulevard Property, LLC and Ultragenyx Pharmaceutical Inc.10-K2/26/201610.43
10.79Lease Agreement, dated November 2, 2015, between Dimension Therapeutics, Inc. and ARE-MA Region No. 20, LLC, and Consent to Assignment to Ultragenyx Pharmaceutical Inc.10-K2/21/201810.66
10.80First Amendment to Lease Agreement, dated March 20, 2018, between Ultragenyx Pharmaceutical Inc. and ARE-MA Region No. 20, LLC10-Q5/8/201810.6
10.81Second Amendment to Lease Agreement, dated July 1, 2018, between Ultragenyx Pharmaceutical Inc. and ARE-MA Region No. 20, LLC10-Q8/3/201810.3
10.82Third Amendment to the Lease Agreement, dated July 29, 2019, between Ultragenyx Pharmaceutical Inc. and ARE-MA Region No., LLC.10-Q7/30/202010.2
10.83Amended and Restated Fourth Amendment, dated August 4, 2020, to the Lease Agreement between Ultragenyx Pharmaceutical Inc. and ARE-MA Region No., LLC.10-Q10/27/202010.5
10.84Fifth Amendment, dated November 25, 2024, to the Lease Agreement between Ultragenyx Pharmaceutical Inc. and ARE-MA Region No. 20, LLCX
10.85Lease Agreement, dated December 15, 2019, between Ultragenyx Pharmaceutical Inc. and ARE-San Francisco No. 17, LLC.10-K2/12/202110.81
10.86First Amendment, dated September 20, 2020, to the Lease Agreement between Ultragenyx Pharmaceutical Inc. and ARE-San Francisco No. 17, LLC.10-K2/12/202110.82
10.87Second Amendment, dated October 21, 2020, to the Lease Agreement between Ultragenyx Pharmaceutical Inc. and ARE-San Francisco No. 17, LLC.10-K2/12/202110.83
10.88Third Amendment, dated July 27, 2022, to the Lease Agreement between Ultragenyx Pharmaceutical Inc. and ARE-San Francisco No. 17, LLC10-K2/16/202310.92
10.89Fourth Amendment, dated December 13, 2024, to the Lease Agreement between Ultragenyx Pharmaceutical Inc. and GI ETS Shoreline LLC (as successor-in-interest to ARE-San Francisco No. 17, LLC)X
10.90Office Lease, dated April 19, 2019, between Ultragenyx Pharmaceutical Inc. and Woburn MCB II, LLC10-K2/14/202010.70
10.91Commercial Lease, dated July 2, 2018, between Ultragenyx Pharmaceutical Inc. and 32 Leveroni LLC10-K2/14/202010.71
10.92Lease, dated August 18, 2022, between Ultragenyx Pharmaceutical Inc. and Brickbottom I QOZB L.P.10-K2/17/202310.95
10.93First Amendment, dated March 12, 2024, between Ultragenyx Pharmaceutical Inc. and Brickbottom I QOZB L.P.X
19.1Ultragenyx Insider Trading PolicyX
21.1Subsidiaries of Ultragenyx Pharmaceutical Inc.X
23.1Consent of Independent Registered Public Accounting FirmX
24.1Power of Attorney (included on the signature page of this report)
31.1Certification of Principal Executive Officer of Ultragenyx Pharmaceutical Inc., as required by Rule 13a-14(a) or Rule 15d-14(a) of the Exchange Act as adopted pursuant to Section 302 of the Sarbanes-Oxley Act of 2002X
31.2Certification of Principal Financial Officer of Ultragenyx Pharmaceutical Inc., as required by Rule 13a-14(a) or Rule 15d-14(a) of the Exchange Act as adopted pursuant to Section 302 of the Sarbanes-Oxley Act of 2002X
32.1§Certification by the Principal Executive Officer and Principal Financial Officer, as required by Rule 13a-14(b) or Rule 15d-14(b) and Section 1350 of Chapter 36 of Title 18 of the United States Code (18 U.S.C. §1350)X
97.1Ultragenyx Pharmaceutical Inc. Clawback Policy2/21/202497.1
101.INSXBRL Instance Document, formatted in Inline XBRLX
101.SCHInline XBRL Taxonomy Extension Schema DocumentX
104The cover page from this Annual Report on Form 10-K, formatted in Inline XBRL and contained in Exhibit 101X
  • Certain identified information has been omitted by means of marking such information with asterisks in reliance on Item 601(b)(10)(iv) of Regulation S-K because it is both (i) not material and (ii) the type that the registrant treats as private or confidential.
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