Zapata Quantum, Inc.

As filed with the U.S. Securities and Exchange Commission on September 3, 2024

Registration No. 333-

UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549

FORMS-1

REGISTRATION STATEMENT

UNDER

THE SECURITIES ACT OF 1933

Zapata Computing Holdings Inc.

(Exact name of registrant as specified in its charter)

100 Federal Street, Floor 20

Boston, MA 02110

(844)492-7282

(Address, including zip code, and telephone number, including area code, of registrant’s principal executive offices)

Christopher Savoie

President and Chief Executive Officer

100 Federal Street, Floor 20

Boston, MA 02110

(844)492-7282

(Name, address, including zip code, and telephone number, including area code, of agent for service)

Copies to:

Stacie S. Aarestad

Foley Hoag LLP

155 Seaport Boulevard

Boston, MA 02210

Tel: (617) 832-1000

Approximate date of commencement of proposed sale to the public: As soon as practicable after this Registration Statement becomes effective.

If any of the securities being registered on this Form are to be offered on a delayed or continuous basis pursuant to Rule 415 under the Securities Act of 1933 check the following box:☐

If this Form is filed to register additional securities for an offering pursuant to Rule 462(b) under the Securities Act, check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering:☐

If this Form is a post-effective amendment filed pursuant to Rule 462(c) under the Securities Act, check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering.☐

If this Form is a post-effective amendment filed pursuant to Rule 462(d) under the Securities Act, check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering.☐

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, a smaller reporting company or an emerging growth company. See the definitions of “large accelerated filer,” “accelerated filer,” “smaller reporting company” and “emerging growth company” in Rule 12b-2 of the Exchange Act.

If an emerging growth company, indicate by check mark if the registrant has elected not to use the extended transition period for complying with any new or revised financial accounting standards provided pursuant to Section 7(a)(2)(B) of the Securities Act.☐

The registrant hereby amends this registration statement on such date or dates as may be necessary to delay its effective date until the registrant shall file a further amendment which specifically states that this registration statement shall thereafter become effective in accordance with Section 8(a) of the Securities Act or until the registration statement shall become effective on such date as the Securities and Exchange Commission, acting pursuant to Section 8(a) of the Securities Act, may determine.

The information contained in this preliminary prospectus is not complete and may be changed. These securities may not be sold until the registration statement filed with the Securities and Exchange Commission is effective. This preliminary prospectus is not an offer to sell these securities and it is not soliciting an offer to buy these securities in any state where the offer or sale is not permitted.

PRELIMINARY PROSPECTUS

SUBJECT TO COMPLETION, DATED SEPTEMBER 3, 2024

Zapata Computing Holdings Inc.

Up to 13,000,000 Shares of Common Stock

This prospectus relates to the resale, from time to time, of up to 13,000,000 shares of common stock, par value $0.0001 per share (the “Common Stock”), by the selling stockholder, Lincoln Park Capital Fund, LLC (“Lincoln Park” or the “Selling Stockholder”). The Common Stock to which this prospectus relates includes shares that (i) have been or may be issued to Lincoln Park pursuant to a purchase agreement between us and Lincoln Park dated as of August 13, 2024 (the “2024 Purchase Agreement”) or (ii) may be issued to Lincoln Park pursuant to a purchase agreement between us, Zapata Computing, Inc. (“Legacy Zapata”) and Lincoln Park dated as of December 19, 2023 (the “2023 Purchase Agreement” and, together with the 2024 Purchase Agreement, the “Purchase Agreements” and each, a “Purchase Agreement”). On August 13, 2024, we issued 500,000 shares of Common Stock to Lincoln Park as consideration for its irrevocable commitment to purchase Common Stock under the 2024 Purchase Agreement. Pursuant to the 2024 Purchase Agreement, we may receive gross proceeds of up to $10,000,000 from the sale of Common Stock to Lincoln Park under the 2024 Purchase Agreement, from time to time, in our discretion after the date of the registration statement of which this prospectus is a part is declared effective and after satisfaction of other conditions in the 2024 Purchase Agreement. Pursuant to the 2023 Purchase Agreement, we may receive gross proceeds of up to $75,000,000 from the sale of Common Stock to Lincoln Park under the 2024 Purchase Agreement, from time to time, in our discretion after April 19, 2024 (the date on which the Initial Registration Statement (as defined below) was declared effective by the Securities and Exchange Commission (“SEC”) and after satisfaction of other conditions in the 2023 Purchase Agreement. Lincoln Park may sell the Common Stock described in this prospectus in a number of different ways and at varying prices. Under a registration statement previously filed with the SEC, and declared effective by the SEC on April 19, 2024, in connection with the 2023 Purchase Agreement (the “Initial Registration Statement”), we registered 13,000,000 shares of Common Stock, of which 10,770,976 have been issued or sold to Lincoln Park as of August 23, 2024 (including 712,025 shares of Common Stock issued as a commitment fee under the 2023 Purchase Agreement for no consideration). The price that Lincoln Park will pay for the shares to be resold pursuant to this prospectus (which will be equitably adjusted for any reorganization, recapitalization, non-cash dividend, forward or reverse stock split, or other similar transaction occurring during the business days used to compute such price) will depend upon the timing of sales and will fluctuate based on the trading price of our Common Stock and, depending on whether the purchase is a 2024 Purchase Agreement Regular Purchase (as defined below), 2023 Purchase Agreement Regular Purchase (as defined below) or an Accelerated Purchase (as defined below), will be set as either (a) 95% of the lower of (i) the lowest trading price for our Common Stock on the applicable Purchase Date (as defined below) and (ii) the average of the three lowest closing sale prices for our Common Stock during the ten consecutive business days ending on the business day immediately preceding such Purchase Date or (b) 95% of the lower of (x) the closing sale price of our Common Stock on the Accelerated Purchase Date (as defined below) and (y) the volume weighted average price of our Common Stock on the Accelerated Purchase Date (during a time period specified in the applicable Purchase Agreement). The 2024 Purchase Agreement prohibits us from directing Lincoln Park to purchase any Common Stock if the closing price of our Common Stock is less than a floor price of $0.10 or greater than a ceiling price of $0.50 (subject to certain conditions and as may be adjusted pursuant to the 2024 Purchase Agreement). The 2023 Purchase Agreement prohibits us from directing Lincoln Park to purchase any Common Stock if the closing price of our Common Stock is less than a floor price of $0.50. While each Purchase Agreement contains certain limitations regarding the number of shares of Common Stock that we can sell to Lincoln Park under such Purchase Agreement, the number of shares of Common Stock that we can sell to Lincoln Park under the Purchase Agreements could constitute a considerable percentage of our public float at the time of such sales. As a result, the resale by Lincoln Park of Common Stock pursuant to this prospectus could have a significant negative impact on the trading price of the Common Stock. See “Lincoln Park Transactions” on page 140 for more information.

We have agreed to bear all of the expenses incurred in connection with the registration of the shares to which this prospectus relates. Lincoln Park will pay or assume discounts, commissions, and fees of underwriters, selling brokers or dealer managers, if any, incurred in connection with the sale of Common Stock. Lincoln Park is an “underwriter” within the meaning of Section 2(a)(11) of the Securities Act of 1933, as amended (the “Securities Act”). See “Plan of Distribution” on page 138 for more information about how Lincoln Park may sell the Common Stock being registered pursuant to this prospectus.

Our Common Stock is listed on the Nasdaq Global Market and our warrants to purchase Common Stock (the “Warrants”) are listed on the Nasdaq Capital Market (together with the Nasdaq Global Market, “Nasdaq”) under the symbols “ZPTA” and “ZPTAW,” respectively. On August 29, 2024, the last reported sales price of Common Stock, as reported by Nasdaq, was $0.50 per share, and the last reported sales price of the Warrants on Nasdaq was $0.0452 per warrant.

We are an “emerging growth company” and a “smaller reporting company” as defined under the federal securities laws and, as such, have elected to comply with certain reduced public company reporting requirements for this prospectus and may elect to do so in future filings.

Investing in Common Stock is highly speculative and involves a high degree of risk. You should review carefully the risks and uncertainties described in the section titled “Risk Factors” beginning on page 18 of this prospectus, and under similar headings in any amendments or supplements to this prospectus.

Neither the Securities and Exchange Commission (the “SEC”) nor any state securities commission has approved or disapproved of the Common Stock or determined if this prospectus is truthful or complete. Any representation to the contrary is a criminal offense.

The date of this prospectus is , 2024

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